starBase is designed for decoding Pan-Cancer and Interaction Networks of lncRNAs, miRNAs, competing endogenous RNAs(ceRNAs), RNA-binding proteins (RBPs) and mRNAs from large-scale CLIP-Seq (HITS-CLIP, PAR-CLIP, iCLIP, CLASH) data and tumor samples (14 cancer types, >6000 samples).

starBase is also developed for deciphering Protein-RNA and miRNA-target interactions, such as protein-lncRNA, protein-sncRNA, protein-mRNA, protein-pseudogene, miRNA-lncRNA, miRNA-mRNA, miRNA-circRNA, miRNA-pseudogene, miRNA-sncRNA interactions and ceRNA networks from 108 CLIP-Seq (HITS-CLIP, PAR-CLIP, iCLIP, CLASH) datasets.

starBase provides miRFunction and ceRNAFunction web tools to predict the function of ncRNAs (miRNAs, lncRNAs, pseduogenes) and protein-coding genes from the miRNA-mediated (ceRNA) regulatory networks.

starBase v2.0 release at Sept. 2013

• Pan-Cancer Analysis
• starBase v2.0 paper in Nucleic Acids Res.
• 14 Cancer Types
• > 6000 tumor samples
• 111 CLIP-Seq data

starBase Pan-Cancer Tutorial starBase v2.0 Tutorial

miRNA-lncRNA interaction(HOTAIR)

hsa-miR-21-5p targetome

miRNA-pseudogene interaction(PTENP1)

miRNA-circRNA interaction(CDas1)

PTEN ceRNA Network

TDP-43-lncRNA interactions

predict miRNA function from targets

predict lncRNA function from ceRNAs

Pan-Cancer BarPlot Chart

Pan-Cancer ScatterPlot Chart

Pan-Cancer BoxPlot Chart

starBase contains 108 CLIP-Seq data from 37 studies.Details

I have been using your web-based tool to design target protectors for miRNAs and I'd like to thank you for putting together such an amazing tool. Great job!
Assistant Project Scientist, University of California San Diego

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