starBase v2.0 is designed for decoding miRNA-lncRNA, miRNA-mRNA, miRNA-circRNA, miRNA-pseudogene, miRNA-sncRNA interactions and ceRNA networks from 108 CLIP-Seq (HITS-CLIP, PAR-CLIP, iCLIP, CLASH) datasets.

starBase v2.0 is also developed for deciphering interactions between RNA-Binding Proteins (RBPs) and RNAs, such as protein-lncRNA, protein-sncRNA, protein-mRNA and protein-pseudogene interactions.

starBase v2.0 provides miRFunction and ceRNAFunction web tools to predict the function of ncRNAs (miRNAs, lncRNAs, pseduogenes) and protein-coding genes from the miRNA-mediated (ceRNA) regulatory networks.

starBase v2.1 release at Nov. 2013

• starBase v2.0 paper in Nucleic Acids Res.
• 111 CLIP-Seq datasets
• ~500,000 miRNA-mRNA interactions
• ~10,000 miRNA-lncRNA interactions
• ~200,000 ceRNA-ceRNA interaction candidates with P<0.05
• ~16,000 miRNA-pseudogene interactions
• ~9,000 miRNA-circRNA interactions
• ~3,000 miRNA-sncRNA interactions
• ~300,000 protein-RNA interactions
• two tools for functional annotation

starBase v2.0 Tutorial

starBase v1.0 release at 2011

starBase contains 108 CLIP-Seq data from 37 studies.Details

hsa-miR-122-5p targets

miRNA-lncRNA interaction(HOTAIR)

miRNA-pseudogene interaction(PTENP1)

miRNA-circRNA interaction(CDas1)

PTEN ceRNA Network

TDP-43-lncRNA interactions

predict miRNA function from targets

predict lncRNA function from ceRNAs

I have been using your web-based tool to design target protectors for miRNAs and I'd like to thank you for putting together such an amazing tool. Great job!
Assistant Project Scientist, University of California San Diego

View More