Welcome to starBase!
starBase v3.0 is an open-source platform for studying the miRNA-ncRNA, miRNA-mRNA, ncRNA-RNA, RBP-ncRNA and RBP-mRNA interactions from CLIP-seq, degradome-seq and RNA-RNA interactome data.
In summary, starBase v3.0 identifies more than 1.1 million miRNA-ncRNA, 2.5 million miRNA-mRNA, 2.1 million RBP-RNA and 1.5 million RNA-RNA interactions from multi-dimensional sequencing data.
Accompany with gene expression data of 32 types of cancers which are derived from 10,882 RNA-seq and 10,546 miRNA-seq data, starBase v3.0 allows researchers performing Pan-Cancer analysis on RNA-RNA and RBP-RNA interactions. starBase v3.0 also privides platforms to perform the survival and differential expression analysis of miRNAs, lncRNAs, mRNAs, pseudogenes, etc.
How to cite:
- Zhou KR, Liu S, Cai L, et al. starBase: decoding the atlas of miRNA-target, RNA-RNA and protein-RNA interactions.
- Li JH, et al.starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data , Nucleic Acids Res. 2014 Jan;42:D92-7.
- Yang JH, et al.starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data , Nucleic Acids Res. 2011 Jan;39:D202-9.
starBase Release v3.0(2018)
- Current species: 23
- CLIP-seq data: 203 RNA-binding proteins(RBPs), 713 datasets
- Degradome-seq: 100 datasets
- RNA-RNA interactome: 34 datasets
- Expression data: 32 types of cancers, ~10,000 samples
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