Welcome to starBase!
starBase v3.0 is an open-source platform for studying the miRNA-ncRNA, miRNA-mRNA, ncRNA-RNA, RNA-RNA, RBP-ncRNA and RBP-mRNA interactions from CLIP-seq, degradome-seq and RNA-RNA interactome data.
In summary, starBase v3.0 identifies more than 1.1 million miRNA-ncRNA, 2.5 million miRNA-mRNA, 2.1 million RBP-RNA and 1.5 million RNA-RNA interactions from multi-dimensional sequencing data.
Accompany with gene expression data of 32 types of cancers which are derived from 10,882 RNA-seq and 10,546 miRNA-seq data, starBase v3.0 allows researchers performing Pan-Cancer analysis on RNA-RNA and RBP-RNA interactions. starBase v3.0 also privides platforms to perform the survival and differential expression analysis of miRNAs, lncRNAs, mRNAs, pseudogenes, etc.
How to cite:
- Zhou KR, Liu S, Cai L, et al. starBase: decoding the atlas of miRNA-target, RNA-RNA and protein-RNA interactions.
- Li JH, et al.starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data , Nucleic Acids Res. 2014 Jan;42:D92-7.
- Yang JH, et al.starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data , Nucleic Acids Res. 2011 Jan;39:D202-9.
starBase Citations
- >1800 Citations in Google Scholar
- Average Daily Usage: ~5000 visits from ~500 unique researchers
- Average Annual Usage: >1,000,000 visits from >100 countries
Statistics of starBase v3.0 (2018 update)
- Species: 23 Species
- CLIP-seq data: >700 datasets
- Degradome-seq: 100 datasets
- RNA-RNA interactome: >30 datasets
- RNA-seq data: >10,800 samples from 32 cancer types
- miRNA-seq data: >10,500 samples from 32 cancer types
- Disease data: >3,236,000 mutations from 366 disease types
- miRNA-ncRNA(CLIP): >1,100,000 interactions
- miRNA-mRNA(CLIP): >2,500,000 interactions
- RBP-mRNA: >1,208,900 interactions
- RBP-ncRNA: >117,000 interactions
- RNA-RNA: >1,530,000 interactions
- miRNA-ncRNA(degradome): >32,000 interactions
- miRNA-mRNA(degradome): >459,000 interactions
- ceRNA: >11,700,000 pairs
- function annoation: >19,900 functional terms from 15 categories
- Pan-Cancer: Differential Expression,Survival Analysis,CoExpression
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