starBase Pan-Cancer Analysis Platform is designed for decoding Pan-Cancer Networks of lncRNAs, miRNAs, pseudogenes, snoRNAs, RNA-binding proteins (RBPs) and all protein-coding genes by analysing their expression profiles across 32 cancer types ( ~10,000 RNA-seq and ~9,900 miRNA-seq samples) integrated from TCGA project.
Our Platform provided the following Cancer-related Analysis Services:
Here, we provided a query entrance for performing Pan-Cancer analysis on 2 candidate genes (such as miRNA-lncRNA, miRNA-mRNA and RBP-lncRNA) in 32 types of cancers with 10,882 RNA-seq and 10,546 miRNA-seq samples.
The expression data of genes in cancers were downloaded from TCGA project via Genomic Data Commons Data Portal.
The expression values of genes from RNA-seq data were scaled with log2(FPKM + 0.01), while the ones from miRNA-seq data were scaled with log2(RPM + 0.01).