Search for Protein-RNA Interactions from CLIP-Seq data
 

1. Select an organism           

AND/OR

2.Select a RNA Binding Protein   


 
protein-RNA interactions from CLIP-Seq data

You can browse the protein-RNA interactions generated from CLIP-Seq (HITS-CLIP, PAR-CLIP, iCLIP) through selecting a RNA Binding Protein, such as FOX2, IGF2BP1, IGF2BP2, IGF2BP3, PTB, PUM2, QKI, TDP-43, TNRC6, AGOs/ALG1 and Nova

Note:
These protein-RNA interactions are obtained from literatures, so you should cite the primary data sources in addition to our starBase paper.

Example:
Combinatorial effects between Ago and Pum2. Pum2 binding cluster overlaps with the known miR-221/222 target site (Kedde et al. Nat Cell Biol 12:1014-1020.).
 
© 2010, JianHua Yang, The Qu lab at Sun Yat-sen University
For comments, suggestions on the starBase database, please use the E-mail: yjhua2110@yahoo.com.cn
Please cite Nucleic Acids Res. 2011; 39(Database issue):D202-D209. within any publication that makes use of any data or methods inspired by starBase.