You can browse the Protein-mRNA interactions by intersecting mRNA sequences with CLIP-Seq peaks.

Examples:

  1. You can input the gene name: PTEN

  2. You can select a RBP name: HuR

  3. If you do not input/select anything, you can browse all protein-RNA interactions

Note:
  1. Number of supporting Experiments can be used to reduce false positives for predicted target sites. For example, medium stringency(>=2) means that >=2 CLIP-Seq experiments supported the predicted RNA-Binding Protein(RBP) target site.
  2. Number of Cancer Types(Pan-Cancer) can be used to explore correlation (pearson correlation: p-value<0.05) between RNA-Binding Protein(RBP) and mRNA across diverse cancer types. For example, cancer type >=1 means that expression of RNA-Binding Protein(RBP) and target is correlation (pearson correlation: p-value<0.05) at least one cancer type.