starBase v2.0: decoding Interaction Networks of lncRNAs, miRNAs, ceRNAs, RNA-Binding Proteins and mRNAs from large-scale tumor samples and CLIP-Seq (HITS-CLIP, PAR-CLIP, iCLIP, CLASH) data

Welcome to starBase

starBase is designed for decoding the Interaction Networks of lncRNAs, miRNAs, competing endogenous RNAs(ceRNAs), RNA-binding proteins (RBPs) and mRNAs from large-scale CLIP-Seq (HITS-CLIP, PAR-CLIP, iCLIP, CLASH) data.

starBase is also developed for deciphering Protein-RNA and miRNA-target interactions, such as protein-lncRNA, protein-sncRNA, protein-mRNA, protein-pseudogene, miRNA-lncRNA, miRNA-mRNA, miRNA-circRNA, miRNA-pseudogene, miRNA-sncRNA interactions and ceRNA networks from 108 CLIP-Seq (HITS-CLIP, PAR-CLIP, iCLIP, CLASH) datasets.

How to Cite:

Li et al. Nucleic Acids Res. 2014 & Yang et al. Nucleic Acids Res. 2011.

How to cite:

starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data.
Li JH, Liu S, Zhou H, Qu LH* and Yang JH*
Nucleic Acids Res. 2014;42:D92-D97.

starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data.
Yang JH, Li JH, Shao P, Zhou H, Chen YQ and Qu LH.
Nucleic Acids Res. 2011;39:D202-D209.

What's New

starBase v2.0 release at Sept. 2013

Data Sets

starBase contains 108 CLIP-Seq data from 37 studies.Details

What People are Saying

I have been using your web-based tool to design target protectors for miRNAs and I'd like to thank you for putting together such an amazing tool. Great job!
Assistant Project Scientist, University of California San Diego

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