CLIP-Seq, Portal, Visualize, Analyze, Discover.
    


Please Cite our starBase Paper:
Li et al. Nucleic Acids Res. 2014;42:D92-D97. & Yang et al. Nucleic Acids Res. 2011;39:D202-D209.

  1. clade:    genome:    assembly:

  2. microRNA:   

  3. Number of supporting Experiments>=

  4. circRNA Symbol(e.g. "CDR1-AS")



View the predicted miRNA-circRNA interactions by scanning circRNA sequences overlapping with CLIP-Seq peaks for potential microRNA targets (miRanda/mirSVR) and then output the detailed information. Here, we list predicted miRNA-target interactions overlapped with CLIP-Seq data.

Examples:

  1. You can input the Gene Symbol:CDR1as

  2. You can also select a microRNA gene: hsa-miR-7

  3. If you do not input/select anything, you can browse all miRNA-circRNA interactions

Note:
  1. Number of supporting Experiments can be used to reduce false positives for predicted target sites. For example, medium stringency(>=2) means that >=2 CLIP-Seq experiments supported the predicted miRNA target site.